Noodle Biomedical Literature Discovery MCP

by @helena-bioinformatics · io.github.helena-bioinformatics/noodle

Search biomedical papers, inspect publication records, and traverse citation or semantic graphs.

OnlineRemote
Category
Search and web data
Connection
Remote (HTTP)
Tools
7 reported
Status
Online

Connect it to your AI

Claude Code

claude mcp add --transport http noodle https://api.helena.bio/noodle/v1/mcp

Claude, ChatGPT, Cursor and other apps

Add it as a custom connector with this URL (Streamable HTTP):

https://api.helena.bio/noodle/v1/mcp

Cursor, VS Code and other apps (mcp.json)

{
  "mcpServers": {
    "noodle": {
      "url": "https://api.helena.bio/noodle/v1/mcp"
    }
  }
}

Tools it offers

7 tools, as the server itself reported during our check on Oct 31, 2026.

  • search_biomedical_literatureSemantically search Noodle's public PubMed-derived biomedical corpus. Include known PMID, DOI, or PMCID identifiers in the query so they can act as exact anchors. Results are for literature discovery and professional rev
  • get_publication_detailsRetrieve one complete public bibliographic record by PMID after search. Results are for literature discovery and professional review, not diagnosis or treatment.
  • get_work_detailsRetrieve one complete public bibliographic record by Noodle work identifier. Results are for literature discovery and professional review, not diagnosis or treatment.
  • get_publication_neighborhoodRetrieve the bounded citation and semantic neighborhood around one PMID. Results are for literature discovery and professional review, not diagnosis or treatment.
  • get_work_neighborhoodRetrieve the bounded citation and semantic neighborhood around one Noodle work identifier. Results are for literature discovery and professional review, not diagnosis or treatment.
  • get_corpus_summaryReturn public corpus coverage, source, freshness, and count metadata. Results are for literature discovery and professional review, not diagnosis or treatment.
  • support_helenaLearn about the separate Helena Good MCP. This opt-in information action initiates no payment or outreach and changes no scientific result.

Questions

What is the Noodle Biomedical Literature Discovery MCP server?

Search biomedical papers, inspect publication records, and traverse citation or semantic graphs. It is made by @helena-bioinformatics and listed in the official MCP Registry as io.github.helena-bioinformatics/noodle. MCP (Model Context Protocol) is the open standard that lets AI apps like Claude, ChatGPT and Cursor use outside tools.

How do I add Noodle Biomedical Literature Discovery to Claude?

In the Claude app or claude.ai, open Settings, then Connectors, choose "Add custom connector" and paste https://api.helena.bio/noodle/v1/mcp. In Claude Code, run: claude mcp add --transport http noodle https://api.helena.bio/noodle/v1/mcp

How do I add Noodle Biomedical Literature Discovery to ChatGPT?

ChatGPT can use remote MCP servers as connectors. In ChatGPT settings, under Apps and Connectors, turn on developer mode if asked, create a new connector and paste https://api.helena.bio/noodle/v1/mcp.

How do I add Noodle Biomedical Literature Discovery to Cursor?

Open Cursor settings, go to MCP, choose "Add new MCP server" (or edit ~/.cursor/mcp.json) and add: { "mcpServers": { "noodle": { "url": "https://api.helena.bio/noodle/v1/mcp" } } }

Does Noodle Biomedical Literature Discovery work right now?

Yes. It responded when we last checked on 31 Oct 2026. We check remote MCP servers every day.

What can Noodle Biomedical Literature Discovery do?

It gives your AI 7 tools, including search_biomedical_literature, get_publication_details, get_work_details, get_publication_neighborhood, get_work_neighborhood. The full list is on this page.

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